Highlight a block and then 'M-;' -- what happened? It is really not helpful.
Edit the matlab.el file at: /usr/local/matlab7/java/extern/EmacsLink/lisp, find and change the following line
;; (define-key km [(meta \;)] 'matlab-comment)
(define-key km [(meta \;)] 'comment-dwim)
Then 'M-;' can be used to comment and uncomment a block.
Use the following keys can do the similar job but we are just familar with 'M-;'. The other problem is some "$" are added after % in this case.C-c; add comments
C-c: remove comments
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